What happens if you navigate to your quickbooks .exe (on the windows partition) and try to run it with right-click run with WINE?
What exactly is the setup going to be... do you need access to Quickbooks running on a Windows PC from a Linux PC?, or do you want Quickbooks on a Windows partition available on the same PC that's booted to Linux?
If on the same PC... by far the best solution would be to boot Windows and run it natively.
Or do a search in the WineHQ application database to see if your version of Quickbooks will work in WINE
(here's a link)
WineHQ Application Database SearchIf Quickbooks is on another Windows PC, you could always use "remote desktop" from the Linux PC to display the Windows PC's desktop on the Linux one. (if you get what I mean)... so effectively you are controlling the Windows PC remotely from a Linux machine.
System>Preferences>Remote Desktopor if it isn't installed
rdesktop from the synaptic package manager.